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Creators/Authors contains: "Smith, Shannon"

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  1. Introduction: Coronavirus disease 2019 (COVID-19) has had a profound impact globally, causing the death of millions of people and deeply affecting socio-psychological, human health, and economic systems, with some nations bearing a disproportionate burden. Despite obesity having been established as one of the major risk factors of COVID-19 severity and other degenerative diseases, the effects that dietary pattern intake plays in COVID-19 outcomes remain poorly understood. The goal of this study is to look into the connection between eating habits, the number of non-obese and obese people, and COVID-19 outcomes in countries with populations exhibiting normal Body Mass Index (BMI), which is an indicator of obesity. Methods: The analysis includes data from 170 countries. From the 170 countries, we focused on 53 nations where the average, BMI falls within the normal range (18.5 to 24.9). A subset of 20 nations was selected for a more detailed examination, comprising 10 nations with the lowest BMI values within the normal range (18.5-19.8) and 10 nations with the highest BMI values within the normal range (23.5-24.9). We used Artificial Intelligence (AI) and Machine Learning (ML) applications to evaluate key metrics, including dietary patterns (sugar and vegetable intake), obesity prevalence, incidence rate, mortality rate, and Case Fatality Rate (CFR). Results: The results demonstrate a significant correlation between higher obesity prevalence and increased COVID-19 severity, evidenced by elevated incidence, mortality, and CFRs in countries like North Macedonia and Italy. In contrast, nations such as Iceland and New Zealand with well-established healthcare systems revealed low mortality rate and case fatality rate despite variations in dietary habits. The study also revealed that vegetable consumption appears to provide a slight to significant protective effects, suggesting that dietary patters alone do not consistently predict COVID-19 Outcomes. Conclusion: Data generated from this study showed the crucial role of healthcare infrastructure along with the testing capacity and data reporting in influencing the success of pandemic responses. It also highlights the need of integrating public health strategies, which focus on obesity management and improvement of healthcare preparedness. In addition, AI-driven predictive modeling offers valuable insights that may guide pandemic response efforts in the future, thereby enhancing global health crisis management and mitigating the impact of future health emergencies. Keywords: COVID-19; Dietary patterns; Obesity; Artificial intelligence; Machine learning; Public health; Health care systems 
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    Free, publicly-accessible full text available April 9, 2026
  2. It has been recognized as early as the Victorian era that the apex of the distal phalanx has a distinct embryological development from the main shaft of the distal phalanx. Recent studies in regenerative medicine have placed an emphasis on the role of the apex of the distal phalanx in bone regrowth. Despite knowledge about the unique aspects of the distal phalanx, all phalanges are often treated as equivalent. Our morphological study reiterates and highlights the special anatomical and embryological properties of the apex of the distal phalanx, and names the apex “the bony cap” to distinguish it. We posit that the distal phalanx shaft is endochondral, while the bony cap is intramembranous and derived from the ectodermal wall. During development, the bony cap may be a separate structure that will fuse to the endochondral distal phalanx in the adult, as it ossifies well before the distal phalanges across taxa. Our study describes and revives the identity of the bony cap, and we identify it in three mammalian species: humans, cats, and horses ( Homo sapiens, Felis catus domestica , and Equus caballus ). During the embryonic period, we show the bony cap has a thimble-like shape that surrounds the proximal endochondral distal phalanx. The bony cap may thus play an inductive role in the differentiation of the corresponding nail, claw, or hoof (keratin structures) of the digit. When it is not present or develops erroneously, the corresponding keratin structures are affected, and regeneration is inhibited. By terming the bony cap, we hope to inspire more attention to its distinct identity and role in regeneration. 
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  3. Abstract Belmont County, Ohio is heavily dominated by unconventional oil and gas development that results in high levels of ambient air pollution. Residents here chose to work with a national volunteer network to develop a method of participatory science to answer questions about the association between impact on the health of their community and pollution exposure from the many industrial point sources in the county and surrounding area and river valley. After first directing their questions to the government agencies responsible for permitting and protecting public health, residents noted the lack of detailed data and understanding of the impact of these industries. These residents and environmental advocates are using the resulting science to open a dialogue with the EPA in hopes to ultimately collaboratively develop air quality standards that better protect public health. Results from comparing measurements from a citizen-led participatory low-cost, high-density air pollution sensor network of 35 particulate matter and 25 volatile organic compound sensors against regulatory monitors show low correlations (consistently R 2 < 0.55). This network analysis combined with complementary models of emission plumes are revealing the inadequacy of the sparse regulatory air pollution monitoring network in the area, and opening many avenues for public health officials to further verify people’s experiences and act in the interest of residents’ health with enforcement and informed permitting practices. Further, the collaborative best practices developed by this study serve as a launchpad for other community science efforts looking to monitor local air quality in response to industrial growth. 
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  4. Abstract Each year vast international resources are wasted on irreproducible research. The scientific community has been slow to adopt standard software engineering practices, despite the increases in high-dimensional data, complexities of workflows, and computational environments. Here we show how scientific software applications can be created in a reproducible manner when simple design goals for reproducibility are met. We describe the implementation of a test server framework and 40 scientific benchmarks, covering numerous applications in Rosetta bio-macromolecular modeling. High performance computing cluster integration allows these benchmarks to run continuously and automatically. Detailed protocol captures are useful for developers and users of Rosetta and other macromolecular modeling tools. The framework and design concepts presented here are valuable for developers and users of any type of scientific software and for the scientific community to create reproducible methods. Specific examples highlight the utility of this framework, and the comprehensive documentation illustrates the ease of adding new tests in a matter of hours. 
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